query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
TkA04G341430	TkA04G341430	function	TkA04G341430	Similar to ZFP1: Probable E3 ubiquitin-protein ligase ZFP1 (Oryza sativa subsp. japonica OX%3D39947)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0009845	seed germination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.745; coverage=22.328; evalue=1.32e-18; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0009908	flower development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.745; coverage=22.328; evalue=1.32e-18; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0010218	response to far red light	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.745; coverage=22.328; evalue=1.32e-18; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0010228	vegetative to reproductive phase transition of meristem	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.135; coverage=33.492; evalue=1.43e-23; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0016567	protein ubiquitination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.606; coverage=39.192; evalue=7.9e-24; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.135; coverage=33.492; evalue=1.43e-23; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0005634	nucleus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.745; coverage=22.328; evalue=1.32e-18; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0008270	zinc ion binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.606; coverage=39.192; evalue=7.9e-24; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0061630	ubiquitin protein ligase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.606; coverage=39.192; evalue=7.9e-24; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	GO	GO:0061659	ubiquitin-like protein ligase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=22.565; evalue=1.7e-17; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	KEGG	ath:AT2G15530	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.745; coverage=22.328; evalue=1.32e-18	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	KEGG	ath:AT4G34040	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.105; coverage=22.565; evalue=1.7e-17	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	KEGG	ath:AT5G42940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.0; coverage=23.753; evalue=1.79e-18	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	KEGG	dosa:Os01g0667700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.606; coverage=39.192; evalue=7.9e-24	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	KEGG	dosa:Os04g0648800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.135; coverage=33.492; evalue=1.43e-23	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	KEGG	osa:4326322	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.606; coverage=39.192; evalue=7.9e-24	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_039562	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G341430	TkA04G341430	organism_homology	Q9ZQF9	sp|Q9ZQF9|MBR1_ARATH E3 ubiquitin-protein ligase MBR1	Arabidopsis thaliana	identity=48.6; coverage=26.202; evalue=2.32e-26; rank=8	TK1151 Swiss-Prot homology; source_gene=TkA04G341430; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G341430			False
TkA04G341430	TkA04G341430	organism_homology	Q5QLR5	sp|Q5QLR5|ZFP1_ORYSJ Probable E3 ubiquitin-protein ligase ZFP1	Oryza sativa subsp. japonica	identity=45.4; coverage=37.5; evalue=6.29e-34; rank=6	TK1151 Swiss-Prot homology; source_gene=TkA04G341430; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G341430			False
TkA04G341430	TkA04G341430	reference_gene_literature	At2g15530	E3 ubiquitin-protein ligase that functions as a regulator of MED25 stability by targeting MED25 for degradation in a RING-H2- dependent way.	Arabidopsis	Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription.; PMID=22992513; DOI=10.1104/pp.112.205500	https://pubmed.ncbi.nlm.nih.gov/22992513/						
TkA04G341430	TkA04G341430	reference_gene_literature	At4g34040	E3 ubiquitin-protein ligase that functions as a regulator of MED25 stability by targeting MED25 for degradation in a RING-H2- dependent way.	Arabidopsis	Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription.; PMID=22992513; DOI=10.1104/pp.112.205500	https://pubmed.ncbi.nlm.nih.gov/22992513/						
TkA04G341430	TkA04G341430	reference_gene_function	At5g42940	Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro.	Arabidopsis	No verified direct reference in this release							
TkA04G341430	TkA04G341430	reference_gene_function	Os01g0667700	Probable E3 ubiquitin-protein ligase.	Rice	No verified direct reference in this release							
TkA04G341430	TkA04G341430	reference_gene_function	Os04g0648800	Probable E3 ubiquitin-protein ligase that functions downstream of HAL3 and is required for HAL3-regulated plant growth.	Rice	No verified direct reference in this release