query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
TkA04G116350	TkA04G116350	function	TkA04G116350	Similar to At1g76050: RNA pseudouridine synthase 2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0000455	enzyme-directed rRNA pseudouridine synthesis	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.407; coverage=40.58; evalue=1.18e-169; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0002239	response to oomycetes	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.988; coverage=44.928; evalue=5.95e-67; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0005739	mitochondrion	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.988; coverage=44.928; evalue=5.95e-67; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0005829	cytosol	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.057; coverage=39.242; evalue=4.9e-62; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0005886	plasma membrane	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.988; coverage=44.928; evalue=5.95e-67; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0009507	chloroplast	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.407; coverage=40.58; evalue=1.18e-169; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0003723	RNA binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.407; coverage=40.58; evalue=1.18e-169; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0004497	monooxygenase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.988; coverage=44.928; evalue=5.95e-67; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0009982	pseudouridine synthase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.407; coverage=40.58; evalue=1.18e-169; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0071949	FAD binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.988; coverage=44.928; evalue=5.95e-67; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	GO	GO:0120159	rRNA pseudouridine synthase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.057; coverage=39.242; evalue=4.9e-62; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	KEGG	ath:AT1G76050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.407; coverage=40.58; evalue=1.18e-169	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	KEGG	ath:AT4G38540	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.988; coverage=44.928; evalue=5.95e-67	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	KEGG	ath:AT5G05320	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.002; coverage=44.928; evalue=9.51e-66	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	KEGG	bsu:BSU15460	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.057; coverage=39.242; evalue=4.9e-62	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	KEGG	dosa:Os06g0717400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.6; coverage=41.806; evalue=1.84e-149	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_035681	GCA_047496595.1_OSU_TarKok_2.0	annotation_conflict	True
TkA04G116350	TkA04G116350	organism_homology	Q3ECD0	sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic	Arabidopsis thaliana	identity=66.3; coverage=81.614; evalue=3.33e-168; rank=1	TK1151 Swiss-Prot homology; source_gene=TkA04G116350; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G116350			False
TkA04G116350	TkA04G116350	organism_homology	Q5Z8P2	sp|Q5Z8P2|PUS2_ORYSJ RNA pseudouridine synthase 2, chloroplastic	Oryza sativa subsp. japonica	identity=59.6; coverage=88.117; evalue=1.5e-155; rank=2	TK1151 Swiss-Prot homology; source_gene=TkA04G116350; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA04G116350			False
TkA04G116350	TkA04G116350	reference_gene_function	At1g76050	RNA 假尿苷合成酶 2，叶绿体型。	Arabidopsis	暂无已核实直接文献							
TkA04G116350	TkA04G116350	reference_gene_function	Os06g0717400	RNA 假尿苷合成酶 2，叶绿体型。	Rice	暂无已核实直接文献