query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
TkA03G382320	TkA03G382320	function	TkA03G382320	Similar to ROS1: DNA glycosylase/AP lyase ROS1 (Arabidopsis thaliana OX%3D3702)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0006281	DNA repair	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0006284	base-excision repair	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0006351	DNA-templated transcription	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0009793	embryo development ending in seed dormancy	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=66.549; coverage=41.765; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0040029	epigenetic regulation of gene expression	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.913; coverage=42.279; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0050832	defense response to fungus	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0141044	epigenetic programming in the endosperm	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=66.549; coverage=41.765; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0141166	chromosomal 5-methylcytosine DNA demethylation pathway	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0005634	nucleus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0005730	nucleolus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0043078	polar nucleus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=66.549; coverage=41.765; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0003677	DNA binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0019104	DNA N-glycosylase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0032183	SUMO binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=66.549; coverage=41.765; evalue=0.0; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0035514	DNA demethylase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0046872	metal ion binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0051539	4 iron, 4 sulfur cluster binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0051747	cytosine C-5 DNA demethylase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.913; coverage=42.279; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	GO	GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	KEGG	ath:AT2G36490	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.088; coverage=70.147; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	KEGG	ath:AT5G04560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=66.549; coverage=41.765; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	KEGG	dosa:Os01g0217900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.913; coverage=42.279; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	KEGG	osa:9271145	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.913; coverage=42.279; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release	TK1151	OH1004	LXL04_005054	GCA_047496595.1_OSU_TarKok_2.0	many_to_one	True
TkA03G382320	TkA03G382320	organism_homology	Q9SJQ6	sp|Q9SJQ6|ROS1_ARATH DNA glycosylase/AP lyase ROS1	Arabidopsis thaliana	identity=53.5; coverage=87.598; evalue=6.52e-307; rank=1	TK1151 Swiss-Prot homology; source_gene=TkA03G382320; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA03G382320			False
TkA03G382320	TkA03G382320	organism_homology	C7IW64	sp|C7IW64|ROS1A_ORYSJ Protein ROS1A	Oryza sativa subsp. japonica	identity=44.5; coverage=89.453; evalue=1.9e-262; rank=3	TK1151 Swiss-Prot homology; source_gene=TkA03G382320; source_db=UniProt Swiss-Prot local database (DIAMOND)	TK1151	TK1151	TkA03G382320			False
TkA03G382320	TkA03G382320	reference_gene_literature	At2g36490	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Arabidopsis	ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.; PMID=12526807; DOI=10.1016/s0092-8674(02)01133-9	https://pubmed.ncbi.nlm.nih.gov/12526807/						
TkA03G382320	TkA03G382320	reference_gene_literature	At2g36490	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Arabidopsis	DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.; PMID=16624880; DOI=10.1073/pnas.0601109103	https://pubmed.ncbi.nlm.nih.gov/16624880/						
TkA03G382320	TkA03G382320	reference_gene_literature	At2g36490	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Arabidopsis	ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion.; PMID=19443451; DOI=10.1093/nar/gkp390	https://pubmed.ncbi.nlm.nih.gov/19443451/						
TkA03G382320	TkA03G382320	reference_gene_literature	At2g36490	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Arabidopsis	Methylation-independent DNA binding modulates specificity of Repressor of Silencing 1 (ROS1) and facilitates demethylation in long substrates.; PMID=20489198; DOI=10.1074/jbc.m110.124578	https://pubmed.ncbi.nlm.nih.gov/20489198/						
TkA03G382320	TkA03G382320	reference_gene_literature	At2g36490	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Arabidopsis	DDM1 and ROS1 have a role in UV-B induced- and oxidative DNA damage in A. thaliana.; PMID=24155752; DOI=10.3389/fpls.2013.00420	https://pubmed.ncbi.nlm.nih.gov/24155752/						
TkA03G382320	TkA03G382320	reference_gene_literature	At2g36490	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Arabidopsis	AP endonucleases process 5-methylcytosine excision intermediates during active DNA demethylation in Arabidopsis.; PMID=25228464; DOI=10.1093/nar/gku834	https://pubmed.ncbi.nlm.nih.gov/25228464/						
TkA03G382320	TkA03G382320	reference_gene_literature	At2g36490	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Arabidopsis	The carboxy-terminal domain of ROS1 is essential for 5-methylcytosine DNA glycosylase activity.; PMID=25240767; DOI=10.1016/j.jmb.2014.09.010	https://pubmed.ncbi.nlm.nih.gov/25240767/						
TkA03G382320	TkA03G382320	reference_gene_function	Q8LK56	Transcriptional activator involved in gene imprinting.	Arabidopsis	No verified direct reference in this release							
TkA03G382320	TkA03G382320	reference_gene_function	At3g10010	Potential transcriptional activator that may act by nicking the target promoter.	Arabidopsis	No verified direct reference in this release							
TkA03G382320	TkA03G382320	reference_gene_literature	Os01g0218032	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity (Probable).	Rice	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny.; PMID=22448681; DOI=10.1111/j.1365-313x.2012.05009.x	https://pubmed.ncbi.nlm.nih.gov/22448681/						
TkA03G382320	TkA03G382320	reference_gene_literature	Os01g0218032	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity (Probable).	Rice	Mutations in the DNA demethylase OsROS1 result in a thickened aleurone and improved nutritional value in rice grains.; PMID=30275307; DOI=10.1073/pnas.1806304115	https://pubmed.ncbi.nlm.nih.gov/30275307/						
TkA03G382320	TkA03G382320	reference_gene_literature	Os05g0445900	Bifunctional DNA glycosylase/lyase, which excises 5-methylcytosine (5-meC) and 5-hydroxymethylcytosine (5-hmeC), leaving an apyrimidinic (AP) site that is subsequently incised by the lyase activity.	Rice	A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.; PMID=21896764; DOI=10.1073/pnas.1112704108	https://pubmed.ncbi.nlm.nih.gov/21896764/