query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation TkA02G587640 TkA02G587640 function TkA02G587640 Similar to AGO4A: Protein argonaute 4A (Oryza sativa subsp. japonica OX%3D39947) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0006417 regulation of translation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0009554 megasporogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.105; coverage=17.25; evalue=4.94e-16; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0010526 transposable element silencing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.105; coverage=17.25; evalue=4.94e-16; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0030422 siRNA processing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:FlyBase UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0031047 regulatory ncRNA-mediated gene silencing biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.697; coverage=17.121; evalue=1.08e-19; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0031048 regulatory ncRNA-mediated heterochromatin formation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0031507 heterochromatin formation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0042742 defense response to bacterium biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0048481 plant ovule development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.105; coverage=17.25; evalue=4.94e-16; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0051607 defense response to virus biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0080188 gene silencing by siRNA-directed DNA methylation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:FlyBase UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:1904159 megasporocyte differentiation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.105; coverage=17.25; evalue=4.94e-16; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0000791 euchromatin cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.697; coverage=17.121; evalue=1.08e-19; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0005654 nucleoplasm cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0005730 nucleolus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0005737 cytoplasm cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.697; coverage=17.121; evalue=1.08e-19; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0015030 Cajal body cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:FlyBase UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:1990904 ribonucleoprotein complex cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0003682 chromatin binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0003723 RNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.697; coverage=17.121; evalue=1.08e-19; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0004521 RNA endonuclease activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.697; coverage=17.121; evalue=1.08e-19; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0035197 siRNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:FlyBase UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 GO GO:0035198 miRNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16; UniProt GO evidence=IDA:CAFA UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 KEGG ath:AT2G27040 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.182; coverage=17.121; evalue=1.59e-16 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 KEGG ath:AT5G21150 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.105; coverage=17.25; evalue=4.94e-16 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 KEGG dosa:Os01g0275200 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.552; coverage=18.807; evalue=1.18e-12 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 KEGG dosa:Os01g0275600 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.697; coverage=17.121; evalue=1.08e-19 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 KEGG dosa:Os04g0151800 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.609; coverage=17.25; evalue=1.22e-17 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 KEGG osa:4324438 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.697; coverage=17.121; evalue=1.08e-19 UniProtKB/Swiss-Prot DAT 2026 current_release TK1151 OH1004 LXL04_012097 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict True TkA02G587640 TkA02G587640 organism_homology Q9ZVD5 sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 Arabidopsis thaliana identity=43.2; coverage=52.727; evalue=7.89e-19; rank=3 TK1151 Swiss-Prot homology; source_gene=TkA02G587640; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA02G587640 False TkA02G587640 TkA02G587640 organism_homology Q9SDG8 sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A Oryza sativa subsp. japonica identity=44.7; coverage=52.727; evalue=2.56e-22; rank=1 TK1151 Swiss-Prot homology; source_gene=TkA02G587640; source_db=UniProt Swiss-Prot local database (DIAMOND) TK1151 TK1151 TkA02G587640 False TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation.; PMID=12522258; DOI=10.1126/science.1079695 https://pubmed.ncbi.nlm.nih.gov/12522258/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.; PMID=15242620; DOI=10.1016/j.cub.2004.06.055 https://pubmed.ncbi.nlm.nih.gov/15242620/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center.; PMID=16839878; DOI=10.1016/j.cell.2006.05.031 https://pubmed.ncbi.nlm.nih.gov/16839878/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.; PMID=16839879; DOI=10.1016/j.cell.2006.05.032 https://pubmed.ncbi.nlm.nih.gov/16839879/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation.; PMID=16998468; DOI=10.1038/nature05198 https://pubmed.ncbi.nlm.nih.gov/16998468/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.; PMID=17938239; DOI=10.1101/gad.451207 https://pubmed.ncbi.nlm.nih.gov/17938239/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis ARGONAUTE4 is required for resistance to Pseudomonas syringae in Arabidopsis.; PMID=17993621; DOI=10.1105/tpc.107.054494 https://pubmed.ncbi.nlm.nih.gov/17993621/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.; PMID=18342361; DOI=10.1016/j.cell.2008.02.034 https://pubmed.ncbi.nlm.nih.gov/18342361/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis Viral genome methylation as an epigenetic defense against geminiviruses.; PMID=18596098; DOI=10.1128/jvi.00719-08 https://pubmed.ncbi.nlm.nih.gov/18596098/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis RNA polymerase V transcription guides ARGONAUTE4 to chromatin.; PMID=19377477; DOI=10.1038/ng.365 https://pubmed.ncbi.nlm.nih.gov/19377477/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci.; PMID=20173091; DOI=10.1105/tpc.109.072199 https://pubmed.ncbi.nlm.nih.gov/20173091/ TkA02G587640 TkA02G587640 reference_gene_literature At2g27040 Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci. Arabidopsis Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing.; PMID=21738482; DOI=10.1371/journal.pgen.1002120 https://pubmed.ncbi.nlm.nih.gov/21738482/ TkA02G587640 TkA02G587640 reference_gene_function Os01g0275600 Probably involved in the RNA silencing pathway. Rice No verified direct reference in this release TkA02G587640 TkA02G587640 reference_gene_function Os04g0151800 Probably involved in the RNA silencing pathway. Rice No verified direct reference in this release TkA02G587640 TkA02G587640 reference_gene_function Q5NBN9 Probably involved in the RNA silencing pathway. Rice No verified direct reference in this release TkA02G587640 TkA02G587640 reference_gene_function Os03g0682200 Probably involved in the RNA silencing pathway. Rice No verified direct reference in this release