query	gene_id	record_type	id	name	namespace_or_position	evidence	source	query_reference	annotation_reference	annotation_gene_id	annotation_assembly	mapping_category	mapped_annotation
LXL04_038901	LXL04_038901	function	LXL04_038901	Similar to RFI2: E3 ubiquitin-protein ligase RFI2 (Arabidopsis thaliana OX%3D3702)		GFF-derived	GCA_047496595.1_OSU_TarKok_2.0	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0007623	circadian rhythm	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0009585	red, far-red light phototransduction	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0009908	flower development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0010114	response to red light	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0010218	response to far red light	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0010468	regulation of gene expression	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0010629	negative regulation of gene expression	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0016567	protein ubiquitination	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0048450	floral organ structural organization	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.173; coverage=38.298; evalue=6.11e-50; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0080050	regulation of seed development	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.173; coverage=38.298; evalue=6.11e-50; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0090227	regulation of red or far-red light signaling pathway	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:2000028	regulation of photoperiodism, flowering	biological_process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0005634	nucleus	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0005737	cytoplasm	cellular_component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0004842	ubiquitin-protein transferase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0008270	zinc ion binding	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	GO	GO:0061630	ubiquitin protein ligase activity	molecular_function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	KEGG	ath:AT2G47700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	KEGG	dosa:Os01g0350900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.173; coverage=38.298; evalue=6.11e-50	UniProtKB/Swiss-Prot DAT 2026 current_release	OH1004	OH1004	LXL04_038901	GCA_047496595.1_OSU_TarKok_2.0		False
LXL04_038901	LXL04_038901	organism_homology	O82239	E3 ubiquitin-protein ligase RFI2 OS=Arabidopsis thaliana OX=3702 GN=RFI2 PE=1 SV=2	Arabidopsis thaliana	identity=40.0; coverage=77.541; evalue=3.54e-60; rank=1	OH-1004 Swiss-Prot homology; source_gene=LXL04_038901; source_db=UniProt Swiss-Prot current_release 2026-06-10	OH1004	OH1004	LXL04_038901			False
LXL04_038901	LXL04_038901	organism_homology	Q5Z8R1	E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1	Oryza sativa subsp. japonica	identity=56.173; coverage=35.225; evalue=6.11e-50; rank=2	OH-1004 Swiss-Prot homology; source_gene=LXL04_038901; source_db=UniProt Swiss-Prot current_release 2026-06-10	OH1004	OH1004	LXL04_038901			False
LXL04_038901	LXL04_038901	reference_gene_function	At2g47700	Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light.	Arabidopsis	No verified direct reference in this release							
LXL04_038901	LXL04_038901	reference_gene_literature	Os01g0350900	Functions as an E3 ligase that promotes polyubiquitination of SPL14/IPA1 for subsequent proteasomal degradation.	Rice	Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.; PMID=28298520; DOI=10.1105/tpc.16.00879	https://pubmed.ncbi.nlm.nih.gov/28298520/