query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation LXL04_022535 LXL04_022535 function LXL04_022535 Similar to LHY: Protein LHY (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0006355 regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0007623 circadian rhythm biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IGI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0009408 response to heat biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0009409 response to cold biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IGI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0010378 temperature compensation of the circadian clock biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0010468 regulation of gene expression biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0010597 green leaf volatile biosynthetic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=87.156; coverage=21.248; evalue=2.06e-47; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0042752 regulation of circadian rhythm biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0042754 negative regulation of circadian rhythm biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0043254 regulation of protein-containing complex assembly biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0045892 negative regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0045893 positive regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0048574 long-day photoperiodism, flowering biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IGI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=ISM:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0000976 transcription cis-regulatory region binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0003677 DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0003700 DNA-binding transcription factor activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 GO GO:0043565 sequence-specific DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 KEGG ath:AT1G01060 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.28; coverage=125.341; evalue=1.46e-80 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 KEGG ath:AT2G46830 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.839; coverage=120.858; evalue=1.9e-74 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 KEGG dosa:Os08g0157600 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.731; coverage=20.273; evalue=1.27e-40 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_022535 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_022535 LXL04_022535 organism_homology Q6R0H1 Protein LHY OS=Arabidopsis thaliana OX=3702 GN=LHY PE=1 SV=2 Arabidopsis thaliana identity=40.28; coverage=99.025; evalue=1.46e-80; rank=1 OH-1004 Swiss-Prot homology; source_gene=LXL04_022535; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_022535 False LXL04_022535 LXL04_022535 organism_homology A0A0P0XBU0 Protein CCA1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCA1 PE=1 SV=1 Oryza sativa subsp. japonica identity=81.731; coverage=20.273; evalue=1.27e-40; rank=5 OH-1004 Swiss-Prot homology; source_gene=LXL04_022535; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_022535 False LXL04_022535 LXL04_022535 reference_gene_function At1g01060 Transcription factor involved in the circadian clock. Arabidopsis No verified direct reference in this release LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.; PMID=11486091; DOI=10.1126/science.1061320 https://pubmed.ncbi.nlm.nih.gov/11486091/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis.; PMID=12007421; DOI=10.1016/s0960-9822(02)00815-1 https://pubmed.ncbi.nlm.nih.gov/12007421/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis.; PMID=12015970; DOI=10.1016/s1534-5807(02)00170-3 https://pubmed.ncbi.nlm.nih.gov/12015970/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots.; PMID=19095940; DOI=10.1126/science.1161403 https://pubmed.ncbi.nlm.nih.gov/19095940/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.; PMID=19218364; DOI=10.1104/pp.108.133272 https://pubmed.ncbi.nlm.nih.gov/19218364/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis Posttranslational regulation of CIRCADIAN CLOCK ASSOCIATED1 in the circadian oscillator of Arabidopsis.; PMID=19339503; DOI=10.1104/pp.109.137414 https://pubmed.ncbi.nlm.nih.gov/19339503/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis FBH1 affects warm temperature responses in the Arabidopsis circadian clock.; PMID=25246594; DOI=10.1073/pnas.1416666111 https://pubmed.ncbi.nlm.nih.gov/25246594/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis.; PMID=31429787; DOI=10.1186/s13059-019-1777-1 https://pubmed.ncbi.nlm.nih.gov/31429787/ LXL04_022535 LXL04_022535 reference_gene_literature At2g46830 Transcription factor involved in the circadian clock and in the phytochrome regulation. Arabidopsis Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression.; PMID=9657153; DOI=10.1016/s0092-8674(00)81464-6 https://pubmed.ncbi.nlm.nih.gov/9657153/ LXL04_022535 LXL04_022535 reference_gene_literature At5g37260 Positive regulator for cold-responsive gene expression and cold tolerance. Arabidopsis Constitutive expression of CIR1 (RVE2) affects several circadian-regulated processes and seed germination in Arabidopsis.; PMID=17587236; DOI=10.1111/j.1365-313x.2007.03156.x https://pubmed.ncbi.nlm.nih.gov/17587236/ LXL04_022535 LXL04_022535 reference_gene_literature At5g37260 Positive regulator for cold-responsive gene expression and cold tolerance. Arabidopsis A DEAD box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation, and cold tolerance in Arabidopsis.; PMID=23371945; DOI=10.1105/tpc.112.108340 https://pubmed.ncbi.nlm.nih.gov/23371945/ LXL04_022535 LXL04_022535 reference_gene_literature Os08g0157600 Transcription factor involved in the regulation of tiller growth and panicle development. Rice The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing.; PMID=32796126; DOI=10.1105/tpc.20.00289 https://pubmed.ncbi.nlm.nih.gov/32796126/ LXL04_022535 LXL04_022535 reference_gene_literature Os08g0157600 Transcription factor involved in the regulation of tiller growth and panicle development. Rice Rice CIRCADIAN CLOCK ASSOCIATED 1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.; PMID=35512208; DOI=10.1093/plphys/kiac196 https://pubmed.ncbi.nlm.nih.gov/35512208/