query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation LXL04_001936 LXL04_001936 function LXL04_001936 Similar to TCP4: Transcription factor TCP4 (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0006355 regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0009733 response to auxin biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.351; coverage=60.0; evalue=6.16e-78; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0009793 embryo development ending in seed dormancy biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0009965 leaf morphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0010150 leaf senescence biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IGI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0048366 leaf development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IGI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0048825 cotyledon development biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0048826 cotyledon morphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IGI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:2000032 regulation of secondary shoot formation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.233; coverage=47.928; evalue=1.14e-47; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=ISM:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0001216 DNA-binding transcription activator activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0003677 DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0003700 DNA-binding transcription factor activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=ISS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:0043565 sequence-specific DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IBA:GO_Central UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 GO GO:1990837 sequence-specific double-stranded DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 KEGG ath:AT1G53230 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.351; coverage=60.0; evalue=6.16e-78 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 KEGG ath:AT2G31070 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.233; coverage=47.928; evalue=1.14e-47 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 KEGG ath:AT3G15030 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.252; coverage=60.0; evalue=3.56e-84 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 KEGG dosa:Os01g0213800 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.307; coverage=58.739; evalue=5.01e-72 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001936 GCA_047496595.1_OSU_TarKok_2.0 annotation_conflict False LXL04_001936 LXL04_001936 organism_homology Q8LPR5 Transcription factor TCP4 OS=Arabidopsis thaliana OX=3702 GN=TCP4 PE=1 SV=1 Arabidopsis thaliana identity=52.252; coverage=56.396; evalue=3.56e-84; rank=1 OH-1004 Swiss-Prot homology; source_gene=LXL04_001936; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_001936 False LXL04_001936 LXL04_001936 organism_homology A2WM14 Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV=1 Oryza sativa subsp. indica identity=50.307; coverage=54.595; evalue=4.6e-71; rank=4 OH-1004 Swiss-Prot homology; source_gene=LXL04_001936; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_001936 False LXL04_001936 LXL04_001936 reference_gene_literature At3g15030 Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Arabidopsis Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis.; PMID=27597774; DOI=10.1105/tpc.16.00360 https://pubmed.ncbi.nlm.nih.gov/27597774/ LXL04_001936 LXL04_001936 reference_gene_literature At3g15030 Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Arabidopsis TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.; PMID=28628608; DOI=10.1371/journal.pgen.1006856 https://pubmed.ncbi.nlm.nih.gov/28628608/ LXL04_001936 LXL04_001936 reference_gene_literature At3g15030 Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Arabidopsis The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana.; PMID=29165850; DOI=10.1111/tpj.13772 https://pubmed.ncbi.nlm.nih.gov/29165850/ LXL04_001936 LXL04_001936 reference_gene_literature At3g15030 Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Arabidopsis The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways.; PMID=30742619; DOI=10.1371/journal.pgen.1007988 https://pubmed.ncbi.nlm.nih.gov/30742619/ LXL04_001936 LXL04_001936 reference_gene_literature At3g15030 Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Arabidopsis The TCP4 Transcription Factor Directly Activates TRICHOMELESS1 and 2 and Suppresses Trichome Initiation.; PMID=31575625; DOI=10.1104/pp.19.00197 https://pubmed.ncbi.nlm.nih.gov/31575625/ LXL04_001936 LXL04_001936 reference_gene_literature At1g53230 Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Arabidopsis TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis.; PMID=17307931; DOI=10.1105/tpc.106.044792 https://pubmed.ncbi.nlm.nih.gov/17307931/ LXL04_001936 LXL04_001936 reference_gene_function At2g31070 Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Arabidopsis No verified direct reference in this release LXL04_001936 LXL04_001936 reference_gene_function A2WM14 Transcription activator. Rice No verified direct reference in this release LXL04_001936 LXL04_001936 reference_gene_function Os01g0213800 Transcription activator. Rice No verified direct reference in this release