query gene_id record_type id name namespace_or_position evidence source query_reference annotation_reference annotation_gene_id annotation_assembly mapping_category mapped_annotation LXL04_001236 LXL04_001236 function LXL04_001236 Similar to PIF3: Transcription factor PIF3 (Arabidopsis thaliana OX%3D3702) GFF-derived GCA_047496595.1_OSU_TarKok_2.0 OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0006351 DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0006355 regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=TAS:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0007165 signal transduction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=TAS:TIGR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009408 response to heat biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009409 response to cold biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009585 red, far-red light phototransduction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009639 response to red or far red light biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009641 shade avoidance biological_process Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.676; coverage=36.164; evalue=1.81e-36; UniProt GO evidence=IEP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009704 de-etiolation biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009723 response to ethylene biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009733 response to auxin biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009737 response to abscisic acid biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009740 gibberellic acid mediated signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009742 brassinosteroid mediated signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36; UniProt GO evidence=IEA:UniProtKB-KW UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0009826 unidimensional cell growth biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0010017 red or far-red light signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0031539 positive regulation of anthocyanin metabolic process biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0042548 regulation of photosynthesis, light reaction biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0045893 positive regulation of DNA-templated transcription biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0080006 internode patterning biological_process Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0080113 regulation of seed growth biological_process Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0090229 negative regulation of red or far-red light signaling pathway biological_process Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:1902074 response to salt biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:1905421 regulation of plant organ morphogenesis biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IMP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:1990785 response to water-immersion restraint stress biological_process Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEP:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0005634 nucleus cellular_component Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0000976 transcription cis-regulatory region binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IPI:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0003677 DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:TAIR UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0003700 DNA-binding transcription factor activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0042802 identical protein binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IPI:IntAct UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0043565 sequence-specific DNA binding molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IDA:UniProtKB UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 GO GO:0046983 protein dimerization activity molecular_function Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67; UniProt GO evidence=IEA:InterPro UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG ath:AT1G09530 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.871; coverage=67.936; evalue=7.71e-67 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG ath:AT2G46970 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.676; coverage=36.164; evalue=1.81e-36 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG dosa:Os01g0286100 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG dosa:Os03g0782500 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.841; coverage=34.993; evalue=4.42e-36 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG dosa:Os05g0139100 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=62.698; coverage=18.448; evalue=7.89e-36 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 KEGG osa:4327916 KEGG gene cross-reference from reviewed UniProt hit; pathway name pending Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.455; coverage=73.939; evalue=6.3e-52 UniProtKB/Swiss-Prot DAT 2026 current_release OH1004 OH1004 LXL04_001236 GCA_047496595.1_OSU_TarKok_2.0 False LXL04_001236 LXL04_001236 organism_homology O80536 Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1 Arabidopsis thaliana identity=39.871; coverage=64.129; evalue=7.71e-67; rank=1 OH-1004 Swiss-Prot homology; source_gene=LXL04_001236; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_001236 False LXL04_001236 LXL04_001236 organism_homology Q0JNI9 Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 OS=Oryza sativa subsp. japonica OX=39947 GN=PIL15 PE=1 SV=2 Oryza sativa subsp. japonica identity=34.455; coverage=63.69; evalue=6.3e-52; rank=2 OH-1004 Swiss-Prot homology; source_gene=LXL04_001236; source_db=UniProt Swiss-Prot current_release 2026-06-10 OH1004 OH1004 LXL04_001236 False LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 在光敏色素信号通路中起作用的转录因子。 Arabidopsis PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings.; PMID=23548744; DOI=10.1105/tpc.113.109710 https://pubmed.ncbi.nlm.nih.gov/23548744/ LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 在光敏色素信号通路中起作用的转录因子。 Arabidopsis Coordinated Regulation of Hypocotyl Cell Elongation by Light and Ethylene through a Microtubule Destabilizing Protein.; PMID=29167353; DOI=10.1104/pp.17.01109 https://pubmed.ncbi.nlm.nih.gov/29167353/ LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 在光敏色素信号通路中起作用的转录因子。 Arabidopsis Submergence stress-induced hypocotyl elongation through ethylene signaling-mediated regulation of cortical microtubules in Arabidopsis.; PMID=31638649; DOI=10.1093/jxb/erz453 https://pubmed.ncbi.nlm.nih.gov/31638649/ LXL04_001236 LXL04_001236 reference_gene_literature At1g09530 在光敏色素信号通路中起作用的转录因子。 Arabidopsis PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.; PMID=31732705; DOI=10.1105/tpc.19.00515 https://pubmed.ncbi.nlm.nih.gov/31732705/ LXL04_001236 LXL04_001236 reference_gene_literature At2g46970 转录因子。 Arabidopsis Identification of primary target genes of phytochrome signaling. Early transcriptional control during shade avoidance responses in Arabidopsis.; PMID=16565297; DOI=10.1104/pp.105.076331 https://pubmed.ncbi.nlm.nih.gov/16565297/ LXL04_001236 LXL04_001236 reference_gene_literature Os01g0286100 转录因子，可能作为phyB依赖光信号转导的负调控因子。 Rice Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.; PMID=17485859; DOI=10.1271/bbb.60643 https://pubmed.ncbi.nlm.nih.gov/17485859/ LXL04_001236 LXL04_001236 reference_gene_function Os05g0139100 非典型bHLH转录因子，作为谷粒大小的负调控因子。 Rice 暂无已核实直接文献 LXL04_001236 LXL04_001236 reference_gene_literature Os03g0782500 转录因子，可能作为phyB依赖光信号转导的负调控因子。 Rice Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.; PMID=17485859; DOI=10.1271/bbb.60643 https://pubmed.ncbi.nlm.nih.gov/17485859/ LXL04_001236 LXL04_001236 reference_gene_literature Os03g0782500 转录因子，可能作为phyB依赖光信号转导的负调控因子。 Rice Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.; PMID=22984180; DOI=10.1073/pnas.1207324109 https://pubmed.ncbi.nlm.nih.gov/22984180/