Species	Reference gene ID	Possible function	Papers / DOI
Arabidopsis	At5g53950	Transcription activator of STM and KNAT6.	Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes.; 1999; DOI: 10.1242/dev.126.8.1563; PMID: 10079219; https://pubmed.ncbi.nlm.nih.gov/10079219/ | Involvement of CUP-SHAPED COTYLEDON genes in gynoecium and ovule development in Arabidopsis thaliana.; 2000; DOI: 10.1093/pcp/41.1.60; PMID: 10750709; https://pubmed.ncbi.nlm.nih.gov/10750709/ | Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the apical region of the Arabidopsis embryo.; 2002; DOI: 10.1242/dev.129.17.3965; PMID: 12163400; https://pubmed.ncbi.nlm.nih.gov/12163400/ | The CUP-SHAPED COTYLEDON genes promote adventitious shoot formation on calli.; 2003; DOI: 10.1093/pcp/pcg038; PMID: 12610213; https://pubmed.ncbi.nlm.nih.gov/12610213/ | MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs.; 2004; DOI: 10.1016/j.cub.2004.06.022; PMID: 15202996; https://pubmed.ncbi.nlm.nih.gov/15202996/ | MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems.; 2004; DOI: 10.1242/dev.01320; PMID: 15294871; https://pubmed.ncbi.nlm.nih.gov/15294871/ | The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis.; 2005; DOI: 10.1016/j.cub.2005.02.017; PMID: 15723790; https://pubmed.ncbi.nlm.nih.gov/15723790/ | KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation.; 2006; DOI: 10.1105/tpc.106.041988; PMID: 16798887; https://pubmed.ncbi.nlm.nih.gov/16798887/ | The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis.; 2006; DOI: 10.1105/tpc.106.045617; PMID: 17098808; https://pubmed.ncbi.nlm.nih.gov/17098808/ | Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation.; 2006; DOI: 10.1105/tpc.106.045716; PMID: 17122068; https://pubmed.ncbi.nlm.nih.gov/17122068/ | Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis.; 2007; DOI: 10.1242/dev.02774; PMID: 17251269; https://pubmed.ncbi.nlm.nih.gov/17251269/ | Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.; 2007; DOI: 10.1242/dev.02817; PMID: 17287247; https://pubmed.ncbi.nlm.nih.gov/17287247/ | Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.; 1997; DOI: 10.1105/tpc.9.6.841; PMID: 9212461; https://pubmed.ncbi.nlm.nih.gov/9212461/
Arabidopsis	At3g15170	Transcription activator of STM and KNAT6.	Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes.; 1999; DOI: 10.1242/dev.126.8.1563; PMID: 10079219; https://pubmed.ncbi.nlm.nih.gov/10079219/ | Involvement of CUP-SHAPED COTYLEDON genes in gynoecium and ovule development in Arabidopsis thaliana.; 2000; DOI: 10.1093/pcp/41.1.60; PMID: 10750709; https://pubmed.ncbi.nlm.nih.gov/10750709/ | The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation.; 2001; DOI: 10.1242/dev.128.7.1127; PMID: 11245578; https://pubmed.ncbi.nlm.nih.gov/11245578/ | Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the apical region of the Arabidopsis embryo.; 2002; DOI: 10.1242/dev.129.17.3965; PMID: 12163400; https://pubmed.ncbi.nlm.nih.gov/12163400/ | Developmental events and shoot apical meristem gene expression patterns during shoot development in Arabidopsis thaliana.; 2002; DOI: 10.1046/j.1365-313x.2002.01479.x; PMID: 12492830; https://pubmed.ncbi.nlm.nih.gov/12492830/ | The CUP-SHAPED COTYLEDON genes promote adventitious shoot formation on calli.; 2003; DOI: 10.1093/pcp/pcg038; PMID: 12610213; https://pubmed.ncbi.nlm.nih.gov/12610213/ | Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis.; 2003; DOI: 10.1046/j.1365-313x.2003.01759.x; PMID: 12787253; https://pubmed.ncbi.nlm.nih.gov/12787253/ | CUC1 gene activates the expression of SAM-related genes to induce adventitious shoot formation.; 2003; DOI: 10.1046/j.1365-313x.2003.01911.x; PMID: 14617069; https://pubmed.ncbi.nlm.nih.gov/14617069/ | MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs.; 2004; DOI: 10.1016/j.cub.2004.06.022; PMID: 15202996; https://pubmed.ncbi.nlm.nih.gov/15202996/ | MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems.; 2004; DOI: 10.1242/dev.01320; PMID: 15294871; https://pubmed.ncbi.nlm.nih.gov/15294871/ | The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis.; 2005; DOI: 10.1016/j.cub.2005.02.017; PMID: 15723790; https://pubmed.ncbi.nlm.nih.gov/15723790/ | KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation.; 2006; DOI: 10.1105/tpc.106.041988; PMID: 16798887; https://pubmed.ncbi.nlm.nih.gov/16798887/ | Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation.; 2006; DOI: 10.1105/tpc.106.045716; PMID: 17122068; https://pubmed.ncbi.nlm.nih.gov/17122068/ | Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.; 2007; DOI: 10.1242/dev.02817; PMID: 17287247; https://pubmed.ncbi.nlm.nih.gov/17287247/ | Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.; 1997; DOI: 10.1105/tpc.9.6.841; PMID: 9212461; https://pubmed.ncbi.nlm.nih.gov/9212461/
Arabidopsis	At5g61430	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO.	No verified direct reference in this release
Arabidopsis	At5g07680	NAC domain-containing protein 79.	No verified direct reference in this release
Arabidopsis	At3g29035	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4- 5n)[AG][CT]ACGCAA-3'.	ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana.; 2011; DOI: 10.1093/mp/ssq080; PMID: 21303842; https://pubmed.ncbi.nlm.nih.gov/21303842/