Species	Reference gene ID	Possible function	Papers / DOI
Arabidopsis	At1g56010	Transcriptional activator that mediates auxin signaling to promote lateral root development.	No verified direct reference in this release
Arabidopsis	At1g76420	Transcription activator.	The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis.; 2003; DOI: 10.1105/tpc.012203; PMID: 12837947; https://pubmed.ncbi.nlm.nih.gov/12837947/ | Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation.; 2006; DOI: 10.1105/tpc.106.045716; PMID: 17122068; https://pubmed.ncbi.nlm.nih.gov/17122068/
Arabidopsis	At5g53950	Transcription activator of STM and KNAT6.	Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes.; 1999; DOI: 10.1242/dev.126.8.1563; PMID: 10079219; https://pubmed.ncbi.nlm.nih.gov/10079219/ | Involvement of CUP-SHAPED COTYLEDON genes in gynoecium and ovule development in Arabidopsis thaliana.; 2000; DOI: 10.1093/pcp/41.1.60; PMID: 10750709; https://pubmed.ncbi.nlm.nih.gov/10750709/ | Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the apical region of the Arabidopsis embryo.; 2002; DOI: 10.1242/dev.129.17.3965; PMID: 12163400; https://pubmed.ncbi.nlm.nih.gov/12163400/ | The CUP-SHAPED COTYLEDON genes promote adventitious shoot formation on calli.; 2003; DOI: 10.1093/pcp/pcg038; PMID: 12610213; https://pubmed.ncbi.nlm.nih.gov/12610213/ | MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs.; 2004; DOI: 10.1016/j.cub.2004.06.022; PMID: 15202996; https://pubmed.ncbi.nlm.nih.gov/15202996/ | MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems.; 2004; DOI: 10.1242/dev.01320; PMID: 15294871; https://pubmed.ncbi.nlm.nih.gov/15294871/ | The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis.; 2005; DOI: 10.1016/j.cub.2005.02.017; PMID: 15723790; https://pubmed.ncbi.nlm.nih.gov/15723790/ | KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation.; 2006; DOI: 10.1105/tpc.106.041988; PMID: 16798887; https://pubmed.ncbi.nlm.nih.gov/16798887/ | The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis.; 2006; DOI: 10.1105/tpc.106.045617; PMID: 17098808; https://pubmed.ncbi.nlm.nih.gov/17098808/ | Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation.; 2006; DOI: 10.1105/tpc.106.045716; PMID: 17122068; https://pubmed.ncbi.nlm.nih.gov/17122068/ | Plants expressing a miR164-resistant CUC2 gene reveal the importance of post-meristematic maintenance of phyllotaxy in Arabidopsis.; 2007; DOI: 10.1242/dev.02774; PMID: 17251269; https://pubmed.ncbi.nlm.nih.gov/17251269/ | Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.; 2007; DOI: 10.1242/dev.02817; PMID: 17287247; https://pubmed.ncbi.nlm.nih.gov/17287247/ | Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.; 1997; DOI: 10.1105/tpc.9.6.841; PMID: 9212461; https://pubmed.ncbi.nlm.nih.gov/9212461/
Arabidopsis	At5g61430	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO.	No verified direct reference in this release
Rice	Os04g0460600	Transcription factor involved in the regulation of tiller bud outgrowth, but does not seem to regulate tiller bud initiation.	Overexpression of a NAC-domain protein promotes shoot branching in rice.; 2007; DOI: 10.1111/j.1469-8137.2007.02177.x; PMID: 17888111; https://pubmed.ncbi.nlm.nih.gov/17888111/ | OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.; 2015; DOI: 10.1111/tpj.12819; PMID: 25754802; https://pubmed.ncbi.nlm.nih.gov/25754802/ | A Rice NAC Transcription Factor Promotes Leaf Senescence via ABA Biosynthesis.; 2017; DOI: 10.1104/pp.17.00542; PMID: 28500268; https://pubmed.ncbi.nlm.nih.gov/28500268/ | Overexpression of miR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.; 2018; DOI: 10.1093/jxb/ery017; PMID: 29365136; https://pubmed.ncbi.nlm.nih.gov/29365136/ | OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.; 2018; DOI: 10.1111/tpj.13867; PMID: 29436050; https://pubmed.ncbi.nlm.nih.gov/29436050/ | OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.; 2020; DOI: 10.1111/pbi.13209; PMID: 31389120; https://pubmed.ncbi.nlm.nih.gov/31389120/ | Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.; 2019; DOI: 10.1186/s12284-019-0334-6; PMID: 31637532; https://pubmed.ncbi.nlm.nih.gov/31637532/ | OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling.; 2021; DOI: 10.3389/fpls.2021.699303; PMID: 34367219; https://pubmed.ncbi.nlm.nih.gov/34367219/